Getting Started

Quickstart FaceBase Data Philosophy

Using FaceBase

Key Concepts for FaceBase Users Browsing and Filtering Data Visualizations in FaceBase Data Sharing and Citing Data Exporting Data from FaceBase Accessing Data Programmatically Using 3D Viewers Viewing NIfTI files Converting TIFF to OME-TIFF (using Bio Formats)

Requesting Controlled-Access Human Data

Controlled-Access Human Data - Policy and Requests A. Read and complete the Data Use Certificate Agreement (DUC) B. Complete the online Data Access Request (DAR) form C. Select the Requested Datasets D. Print, Gather Signatures and Submit the DUC and DAR forms E. Receive notification and further instructions F. Create and upload your encryption keys G. Renew access

Submitting Data - Basics

Video Tutorials for Contributors Key Concepts for Data Contributors Data Submission Process Creating a Dataset Creating Experiments, Biosamples, and Replicates Uploading Data Files Quality Control Rules Releasing Your Dataset Self-guided Tutorial

Submitting Data - Advanced

Using the Annotations Editor (2D images) Defining Surface Models for the Surface Mesh Viewer (3D models) Linking Thumbnails to Files

Tools

DERIVA Tools - Bulk upload and export

Support

Getting Help FAQs

Video Tutorials for Contributors

In conjunction with the written content available on this site, you also have access to webcasts from Bootcamps and other training videos below:

Submitting your data to FaceBase

Submission Demo 1 of 4: Submitting the form to Creating a Dataset

Submission Demo 2 of 4: Biosamples, Experiments & Replicates

Submission Demo 3 of 4: Uploading Data Files

Submission Demo 4 of 4: Pipelines and Annotations